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Jim__

(14,073 posts)
Wed May 15, 2013, 09:36 PM May 2013

Using analog computation circuits, engineers design cells that can compute logarithms, divide ...

... take square roots.

The full paper is only available with a subscription or purchase. I'd love to know how a cell, or a network of cells, can compute a logarithm.

From phys.org:

...

To create an analog adding or multiplying circuit that can calculate the total quantity of two or more compounds in a cell, the researchers combined two circuits, each of which responds to a different input. In one circuit, a sugar called arabinose turns on a transcription factor that activates the gene that codes for green fluorescent protein (GFP). In the second, a signaling molecule known as AHL also turns on a gene that produces GFP. By measuring the total amount of GFP, the total amount of both inputs can be calculated.

To subtract or divide, the researchers swapped one of the activator transcription factors with a repressor, which turns off production of GFP when the input molecule is present. The team also built an analog square root circuit that requires just two parts, while a recently reported digital synthetic circuit for performing square roots had more than 100.

"Analog computation is very efficient," Sarpeshkar says. "To create digital circuits at a comparable level of precision would take many more genetic parts."

Another of the team's circuits can perform division by calculating the ratio of two different molecules. Cells often perform this kind of computation on their own, which is critical for monitoring the relative concentrations of molecules such as NAD and NADH, which are frequently converted from one to the other as they help other cellular reactions take place.


more ...

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Using analog computation circuits, engineers design cells that can compute logarithms, divide ... (Original Post) Jim__ May 2013 OP
sorry, did not realize this was a Forum Skittles May 2013 #1
I for one welcome our new cyborg overlords yodermon May 2013 #2
Computing logarithms with circuits is typically based on use of goldent May 2013 #3
Thanks. When I first read the article, I thought they planned on using these in computational ... Jim__ May 2013 #4
They would probably work great for things like making CGI effects look more natural tridim May 2013 #5

goldent

(1,582 posts)
3. Computing logarithms with circuits is typically based on use of
Thu May 16, 2013, 12:58 AM
May 2013

some physical phenomena that is logarithmic - many of which occur in nature (for example, certain operating regions of a diode are exponential - the inverse of log).

For the Nature article, here is what they say...

Our wide-dynamic-range, positive-logarithm circuit consists of a positive-feedback component located on a low-copy-number plasmid (LCP) and a ‘shunt’ component located on a high-copy-number plasmid (HCP). The LCP comprises promoters which generate transcription factors that bind to the promoters, thus increasing the generation of transcription factors by means of a positive-feedback loop and alleviating saturation of the interaction between inducers and transcription factors.


Now I don't understand this description, but I suspect they are again taking advantage of some natural process that is logarithmic.

Jim__

(14,073 posts)
4. Thanks. When I first read the article, I thought they planned on using these in computational ...
Thu May 16, 2013, 08:39 AM
May 2013

circuits. But, reading the abstract, it looks like they plan on utilizing them in biotech applications - like implanting them in an organism to detect changes in the biochemical environment. That makes more sense than using them in, say, circuits doing mathematical calculations.

tridim

(45,358 posts)
5. They would probably work great for things like making CGI effects look more natural
Thu May 16, 2013, 08:57 AM
May 2013

and making digital music sound more "human".

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