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EPA doesn't administer the Endangered Species Act, the Fish and Wildlife Service and National Marine Fisheries Service do. As a matter of fact, whenever EPA (or any federal agency for that matter) decides to do something, they need to run the plans by FWS and/or NMFS to make sure the action complies with ESA.
Conservation groups should be using situations like this to highlight:
1.) the many different directions in which the wildlife agencies are being pulled, which forces them to prioritize at the expense of species and habitats, and
2.) that perhaps given the game of catchup the wildlife agencies are playing after being defunded during the Bush administration, and subsequently the massive listing petitions and FOIA requests they've received from conservation organizations, maybe the wildlife agencies need a little (or a whole lot) more funding to meet their mandates.
Some of the FWS offices in larger states are indeed fairly large, for example, some of the California offices. However, consider all the projects permitted, funded, or carried out by federal agencies in that state. Every one of those projects crosses a FWS or NMFS biologist's desk, and individual projects can require weeks of effort to revise before they meet the requirements of ESA. Then there are the listing petitions, which for each species requires an initial 90 day review, and if that's positive (meaning listing may be required), then a 12 month review. Responses to listing petitions, both 90 day and 12 month findings, are published in the Federal Register, which in itself is very expensive. All this is just one branch of FWS and NMFS...FWS also has branches dedicated to managing refuges, acquiring refuges and easements, law enforcement, legal interpretation and defense (they spend a lot defending themselves from conservation groups that don't think listing decisions are fast enough, or correct), another concerned with resource damage assessment and remediation (think oil spills, landscape-scale pesticide or mine tailings contamination), fisheries, migratory birds, and so on.
Oh, and as I mentioned, some of the offices, such as the California offices, are fairly large. They struggle to keep up with the workload. The field offices in the Dakotas (one in each state) dedicated to project reviews, listing petitions, reintroductions, and contaminant assessments are staffed by five biologists apiece. I know at least one of them was staffed a few administrations ago by twenty or so biologists. Field offices in other states are similarly understaffed relative to workload because they are funded at levels well below those necessary to meet the mandates. Being reminded of that obvious fact on a regular basis by conservation groups is probably not helping matters.
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