"Zebra mussels affect natural ecosystems both directly and indirectly. The greatest direct impact relates to the mussel’s feeding behavior. Zebra mussels are filter feeders and process up to 1 gallon of water per day/mussel. During this process, every particle in the water column is removed and either eaten by the mussels or wrapped in mucus and spit out. This feeding ability, in combination with high population densities, rapidly clears the water of even the largest lakes. Since zebra mussels became established in Lake Erie, water clarity has increased from 6 inches to 30 feet in some areas. Unfortunately, the material removed from the water consists of other live animals and algae that supply food for larval fish and other invertebrates. In response to this changing food supply, populations of some animals have begun to decline.
As the lakes clear, the brighter light levels cause aquatic plants to increase in number and size. This increased plant growth can be beneficial to some fish such as northern pike and to yellow perch. However, the plants do cause problems for recreational boaters and swimming beaches, and can increase taste-and-odor problems in drinking water supplies, and can block water-intake pipes during storm events.
One drastic impact of the zebra mussel invasion is the near extinction of native American unionid clams in Lake St. Clair and in the western basin of Lake Erie. Zebra mussels attach and build colonies on the clams, reducing their ability to move, feed, and breed, eventually leading to the death of the clams within a couple of years.
Zebra mussels have had positive impacts on parts of the Great Lakes ecosystems. Many native fish, birds, and other animals eat young and adult zebra mussels. Migratory ducks have changed their flight patterns in response to zebra mussel colonies. Lake sturgeon feed heavily on zebra mussels, as do yellow perch, freshwater drum, catfish, and all the sunfish. The increase in aquatic plants provides excellent nursery areas for young fish and other animals, leading to increases in smallmouth bass populations in Lake St. Clair and the Huron River."
http://www.glsc.usgs.gov/main.php?content=research_invasive_zebramussel